Package: swissknife Title: Handy code shared in the FMI CompBio group Version: 0.44 Authors@R: c(person("Michael", "Stadler", email = "michael.stadler@fmi.ch", role = c("aut", "cre")), person("Charlotte", "Soneson", email = "charlotte.soneson@fmi.ch", role = "aut"), person("Panagiotis", "Papasaikas", email = "panagiotis.papasaikas@fmi.ch", role = "aut"), person("Dania", "Machlab", email = "dania.machlab@fmi.ch", role = "aut"), person("Fiona", "Ross", email = "fiona.ross@fmi.ch", role = "aut"), person("Friedrich Miescher Institute for Biomedical Research", role = "cph")) Description: A collection of useful R functions performing various tasks that might be re-usable and worth sharing. SystemRequirements: C++11 Depends: R (>= 4.1.0) Imports: BiocGenerics, BiocParallel, datasets, GenomeInfoDb, GenomicRanges, graphics, grDevices, IRanges, KernSmooth, matrixStats, methods, png, Rcpp, S4Vectors, stats, usethis, SummarizedExperiment, utils, XVector, dplyr, rlang, cli Suggests: Biostrings, BiocStyle, BSgenome, GenomicAlignments, Gviz, knitr, QuasR, Rbowtie, rmarkdown, Rsamtools, rtracklayer, SingleCellExperiment, SingleR, testthat, tidyr, withr, wordspace, BiocManager, scrapper LinkingTo: Rcpp License: GPL (>= 3) Encoding: UTF-8 RoxygenNote: 7.3.3 URL: https://github.com/fmicompbio/swissknife Config/pak/sysreqs: cmake git make libgit2-dev libpng-dev libuv1-dev libssl-dev libx11-dev zlib1g-dev Repository: https://fmicompbio.r-universe.dev Date/Publication: 2025-09-17 14:33:57 UTC RemoteUrl: https://github.com/fmicompbio/swissknife RemoteRef: HEAD RemoteSha: c69e512b954390538f6557f10b3865f4af52eead NeedsCompilation: yes Packaged: 2026-10-26 10:48:37 UTC; root Author: Michael Stadler [aut, cre], Charlotte Soneson [aut], Panagiotis Papasaikas [aut], Dania Machlab [aut], Fiona Ross [aut], Friedrich Miescher Institute for Biomedical Research [cph] Maintainer: Michael Stadler